PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G02660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 362aa    MW: 39415.1 Da    PI: 7.4387
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G02660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.49.9e-1582141155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  ++ Aa+a++ a++k++g
  LPERR06G02660.1  82 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEDAAARAYDLAALKYWG 141
                      789******************888855566447**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1582150IPR016177DNA-binding domain
PfamPF008471.1E-1182141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1483150IPR001471AP2/ERF domain
SMARTSM003802.7E-2383155IPR001471AP2/ERF domain
PROSITE profilePS5103219.17783149IPR001471AP2/ERF domain
PRINTSPR003672.5E-58495IPR001471AP2/ERF domain
PROSITE profilePS5103211.206138217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-7167218IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-7167219IPR016177DNA-binding domain
SMARTSM003801.1E-4172223IPR001471AP2/ERF domain
PRINTSPR003672.5E-5199219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MATETYGLVK DELLLHGQGR FYCEATPTTV TTAASGGGGG GKNVKRRRRE PSSAMSAATV  60
AGNGKDVAGD RSGGSNAIKR SSRFRGVSRH RWTGRFEAHL WDKGTWNPTQ KKKGKQVYLG  120
AYNEEDAAAR AYDLAALKYW GPTTYTNFPV ADYEKELKVM QGVSKEEYLA SIRRKSNGFS  180
RGVSKYRGVA RTQEEAARAY DIAAIEYRGI NAVTNFDLSS YIRWLKPTPH DVTPTSQLLP  240
PPPMAPFAAD VYACVRPSPS PPPTTTTTAL SLLLRSSVFQ ELVARQPTAV VDNGDDVAAA  300
ADVKEPPLTT TTTMLPESDR FGEVLYGDDE AAAAAAYGCS MYELDDSFAL IEDSLWNCFQ  360
SD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115PTQKKKGKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034872e-41AP003487.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20.
GenBankAP0037672e-41AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149622e-41AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641668.11e-158PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6PQQ31e-64AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0D9WLR30.0A0A0D9WLR3_9ORYZ; Uncharacterized protein
STRINGORGLA06G0029800.11e-156(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-56AP2 family protein